splicejac.tools.export_methods
methods to export spliceJAC’s results
Module Contents
Functions
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Export the GRN of clusters to a csv file |
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Export the GRN of a cell state to a csv file |
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Export gene transition scores for all transitions in a csv file |
- splicejac.tools.export_methods.grn_to_csv(adata, cluster, filename)
Export the GRN of clusters to a csv file
- adata: ~anndata.AnnData
count matrix
- cluster: str
cell state
- filename: str
the name of export file, including path and .csv extension
None
- splicejac.tools.export_methods.export_grn(adata, cluster, filename=None)
Export the GRN of a cell state to a csv file
If no filename is provided, a local folder results/exported_results/ will be created (if not existing) and the GRN file will be saved with default name “grn” + cluster + “.csv”
- adata: ~anndata.AnnData
count matrix
- cluster: str
cell state
- filename: str (default: None)
the name of export file, including path and .csv extension
None
- splicejac.tools.export_methods.export_transition_scores(adata, filename=None)
Export gene transition scores for all transitions in a csv file
If no filename is provided, a local folder results/exported_results/ will be created (if not existing) and the GRN file will be saved with default name “grn” + cluster + “.csv”
- adata: ~anndata.AnnData
count matrix
- filename: str (defaul: None)
the name of export file, including path and .csv extension
None