splicejac.plot.sensitivity
plotting resources for sensitivity analysis
Module Contents
Functions
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Plot the summary of spliceJAC inference as a function of regression methods and parameters |
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Plot the summary of spliceJAC inference sensitivity to subsampling of cells in each cell state |
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Summary plot of the robustness of spliceJAC inference over multiple inferences with a fraction of the total |
- splicejac.plot.sensitivity.regression_sens(adata, font_size=10, legend_font=10, title_font=12, legend_loc='best', showfig=None, savefig=None, format='pdf', figsize=(12, 4))
Plot the summary of spliceJAC inference as a function of regression methods and parameters
- adata: ~anndata.AnnData
count matrix
- font_size: int (default: 10)
fontsize of axes and legend labels
- legend_font: int (default=12)
font size of legend
- title_font: int (default=12)
font size of title
- legend_loc: str (default=’best’)
legend location
- showfig: Bool or None (default: None)
if True, show the figure
- savefig: Bool or None (default: None)
if True, save the figure using the savefig path
- format: str (default: ‘pdf’)
figure format
- figsize: tuple (default: (12,4))
size of figure
None
- splicejac.plot.sensitivity.sampling_sens(adata, font_size=10, legend_font=10, legend_loc='best', showfig=None, savefig=None, format='pdf', figsize=(12, 4))
Plot the summary of spliceJAC inference sensitivity to subsampling of cells in each cell state
- adata: ~anndata.AnnData
count matrix
- font_size: int (default: 10)
fontsize of axes and legend labels
- legend_font: int (default=10)
font size of legend
- legend_loc: str (default=’best’)
legend location
- showfig: Bool or None (default: None)
if True, show the figure
- savefig: Bool or None (default: None)
if True, save the figure using the savefig path
- format: str (default: ‘pdf’)
figure format
- figsize: tuple (default: (12,4))
size of figure
None
- splicejac.plot.sensitivity.subsample_stability(adata, font_size=10, dist_color='firebrick', sign_color='seagreen', eig_color='mediumturquoise', showfig=None, savefig=None, format='pdf', figsize=(12, 4))
Summary plot of the robustness of spliceJAC inference over multiple inferences with a fraction of the total number of cells in each cell state
Details on accepted colors for pyplot boxplot can be found at: https://matplotlib.org/stable/gallery/color/named_colors.html
- adata: ~anndata.AnnData
count matrix
- font_size: int (default: 10)
fontsize of axes and legend labels
- dist_color: str (default: ‘firebrick’)
face color for jacobian distance boxplot
- sign_color: str (default: ‘seagreen’)
face color for wrong sign boxplot
- eig_color: str (default: ‘mediumturquoise’)
face color for positive eigenvalues boxplot
- showfig: Bool or None (default: None)
if True, show the figure
- savefig: Bool or None (default: None)
if True, save the figure using the savefig path
- format: str (default: ‘pdf’)
figure format
- figsize: tuple (default: (12,4))
size of figure
None